Package index
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Auxiliary_electrode - Class definition for auxiliary channels
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LFP_electrode - Definitions of electrode with local field potential signal type
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LFP_reference - Definitions of reference with local field potential signal type
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RAVEAbstarctElectrode - Abstract definition of electrode class in 'RAVE'
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RAVEEpoch - Definition for epoch class
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RAVEPreprocessSettings - Defines preprocess configurations
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RAVEProject - Definition for 'RAVE' project class
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RAVESubject - Defines 'RAVE' subject class
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RAVESubjectBaseRepository - 'RAVE' class for base repository
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RAVESubjectEpochPhaseRepository - 'RAVE' class for epoch repository - time-frequency phase
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RAVESubjectEpochPowerRepository - 'RAVE' class for epoch repository - time-frequency power
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RAVESubjectEpochRawVoltageRepository - 'RAVE' class for epoch repository - raw voltage
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RAVESubjectEpochRepository - 'RAVE' class for epoch repository
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RAVESubjectEpochTimeFreqBaseRepository - 'RAVE' class for epoch repository - time-frequency (internal)
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RAVESubjectEpochTimeFreqCoefRepository - 'RAVE' class for epoch repository - time-frequency
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RAVESubjectEpochVoltageRepository - 'RAVE' class for epoch repository - voltage
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RAVESubjectRecordingBlockPhaseRepository - 'RAVE' class for loading time-frequency phase components
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RAVESubjectRecordingBlockPowerRepository - 'RAVE' class for loading time-frequency power components
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RAVESubjectRecordingBlockRawVoltageRepository - 'RAVE' class for blocks of voltage repository
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RAVESubjectRecordingBlockRepository - 'RAVE' class for loading entire recording block repository
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RAVESubjectRecordingBlockTimeFreqBaseRepository - 'RAVE' class for loading entire block of time-frequency coefficients
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RAVESubjectRecordingBlockTimeFreqCoefRepository - 'RAVE' class for loading time-frequency coefficients
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RAVESubjectRecordingBlockVoltageRepository - 'RAVE' class for blocks of voltage repository
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Spike_electrode - Class definition for micro-wire spike channels
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YAELProcess - Class definition of 'YAEL' image pipeline
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archive_subject() - Archive and share a subject
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as_rave_project() - Convert character to
RAVEProjectinstance
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as_yael_process() - Create a 'YAEL' imaging processing instance
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backup_file() - Back up and rename the file or directory
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cache_root()clear_cached_files() - Manipulate cached data on the file systems
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cmd_execute()cmd_run_r() - External shell commands for 'RAVE'
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cmd_run_3dAllineate() - Align images using 'AFNI'
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ants_coreg()cmd_run_ants_coreg() - Register a computerized tomography (CT) image to MRI via 'ANTs'
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cmd_run_dcm2niix() - Convert DICOM to NIfTI via
'dcm2niix'
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cmd_run_freesurfer_recon_all()cmd_run_freesurfer_recon_all_clinical() - Workflow: 'FreeSurfer' surface reconstruction
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cmd_run_fsl_flirt() - Run 'FSL' linear registration
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yael_preprocess()cmd_run_yael_preprocess() - Run a built-in 'YAEL' imaging processing workflow
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collapse2() - Collapse high-dimensional tensor array
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collapse_power() - Collapse power array with given analysis cubes
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compose_channel() - Compose a phantom channel from existing electrodes
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convert_electrode_table_to_bids() - Convert electrode table
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export_table()import_table() - Export data frame to different common formats
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generate_atlases_from_template() - Create brain atlases from template
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generate_reference() - Generate common average reference signal for 'RAVE' subjects
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get_available_morph_to_template() - Get names of available non-linear transforms to the templates
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get_projects() - Get all possible projects in 'RAVE' default directory
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glimpse_voltage_repository_with_blocks()glimpse_voltage_filearray() - Visualizes repositories with interactive plots
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import_from_brainvis()import_from_edf()import_from_h5_mat_per_block()import_from_h5_mat_per_channel()import_from_nevnsx() - Import signal data into 'RAVE'
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install_openneuro() - Install data-sets from OpenNeuro
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install_subject() - Install a subject from the internet, a zip file or a directory
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save_meta2()load_meta2() - Load or save meta data to 'RAVE' subject
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new_electrode()new_reference() - Create new electrode channel instance or a reference signal instance
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new_rave_subject()as_rave_subject()has_rave_subject() - Get
RAVESubjectinstance from character
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niftyreg_coreg()cmd_run_niftyreg_coreg() - Register a computerized tomography (CT) image to MRI via
'NiftyReg'
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plot_volume_slices() - Plot volume slices into scalable vector graphics SVG images
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power_baseline() - Calculate power baseline
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prepare_subject_bare()prepare_subject_bare0() - 'RAVE' repository: basic
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prepare_subject_with_blocks()prepare_subject_raw_voltage_with_blocks()prepare_subject_voltage_with_blocks()prepare_subject_time_frequency_coefficients_with_blocks()prepare_subject_phase_with_blocks()prepare_subject_power_with_blocks() - 'RAVE' repository: with entire recording blocks
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prepare_subject_with_epochs()prepare_subject_raw_voltage_with_epochs()prepare_subject_voltage_with_epochs()prepare_subject_time_frequency_coefficients_with_epochs()prepare_subject_power_with_epochs()prepare_subject_power()prepare_subject_phase_with_epochs() - 'RAVE' repository: with epochs
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py_nipy_coreg()cmd_run_nipy_coreg() - Register a computerized tomography (CT) image to MRI via
'nipy'
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rave_brain() - Load 'FreeSurfer' brain from 'RAVE'
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normalize_commandline_path()cmd_dcm2niix()cmd_freesurfer_home()cmd_fsl_home()cmd_afni_home()cmd_homebrew()cmd_dry_run()rscript_path() - Find external command-line tools
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rave_legacy_subject_format_conversion() - Legacy support for 'RAVE' 1.0 format
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rave_path() - Find file paths based on storage
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LOCATION_TYPESSIGNAL_TYPESIMPORT_FORMATSYAEL_IMAGE_TYPESMNI305_to_MNI152 - 'RAVE' constants
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run_wavelet() - Apply Morlet-Wavelet to subject
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transform_point_to_template()transform_thinfilm_to_mni152() - Calculate template 'MNI' coordinates for points on native brain
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validate_subject - Validate subject data integrity
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validate_time_window() - Validate time windows to be used