Package index • ravecore

All functions

Auxiliary_electrode: Class definition for auxiliary channels

LFP_electrode: Definitions of electrode with local field potential signal type

LFP_reference: Definitions of reference with local field potential signal type

RAVEAbstarctElectrode: Abstract definition of electrode class in 'RAVE'

RAVEEpoch: Definition for epoch class

RAVEPreprocessSettings: Defines preprocess configurations

RAVEProject: Definition for 'RAVE' project class

RAVESubject: Defines 'RAVE' subject class

RAVESubjectBaseRepository: 'RAVE' class for base repository

RAVESubjectEpochPhaseRepository: 'RAVE' class for epoch repository - time-frequency phase

RAVESubjectEpochPowerRepository: 'RAVE' class for epoch repository - time-frequency power

RAVESubjectEpochRawVoltageRepository: 'RAVE' class for epoch repository - raw voltage

RAVESubjectEpochRepository: 'RAVE' class for epoch repository

RAVESubjectEpochTimeFreqBaseRepository: 'RAVE' class for epoch repository - time-frequency (internal)

RAVESubjectEpochTimeFreqCoefRepository: 'RAVE' class for epoch repository - time-frequency

RAVESubjectEpochVoltageRepository: 'RAVE' class for epoch repository - voltage

RAVESubjectRecordingBlockPhaseRepository: 'RAVE' class for loading time-frequency phase components

RAVESubjectRecordingBlockPowerRepository: 'RAVE' class for loading time-frequency power components

RAVESubjectRecordingBlockRawVoltageRepository: 'RAVE' class for blocks of voltage repository

RAVESubjectRecordingBlockRepository: 'RAVE' class for loading entire recording block repository

RAVESubjectRecordingBlockTimeFreqBaseRepository: 'RAVE' class for loading entire block of time-frequency coefficients

RAVESubjectRecordingBlockTimeFreqCoefRepository: 'RAVE' class for loading time-frequency coefficients

RAVESubjectRecordingBlockVoltageRepository: 'RAVE' class for blocks of voltage repository

Spike_electrode: Class definition for micro-wire spike channels

YAELProcess: Class definition of 'YAEL' image pipeline

archive_subject(): Archive and share a subject

as_rave_project(): Convert character to RAVEProject instance

as_yael_process(): Create a 'YAEL' imaging processing instance

backup_file(): Back up and rename the file or directory

cache_root() clear_cached_files(): Manipulate cached data on the file systems

cmd_execute() cmd_run_r(): External shell commands for 'RAVE'

cmd_run_3dAllineate(): Align images using 'AFNI'

ants_coreg() cmd_run_ants_coreg(): Register a computerized tomography (CT) image to MRI via 'ANTs'

cmd_run_dcm2niix(): Convert DICOM to NIfTI via 'dcm2niix'

cmd_run_freesurfer_recon_all() cmd_run_freesurfer_recon_all_clinical(): Workflow: 'FreeSurfer' surface reconstruction

cmd_run_fsl_flirt(): Run 'FSL' linear registration

yael_preprocess() cmd_run_yael_preprocess(): Run a built-in 'YAEL' imaging processing workflow

collapse2(): Collapse high-dimensional tensor array

collapse_power(): Collapse power array with given analysis cubes

compose_channel(): Compose a phantom channel from existing electrodes

convert_electrode_table_to_bids(): Convert electrode table

export_table() import_table(): Export data frame to different common formats

generate_atlases_from_template(): Create brain atlases from template

generate_reference(): Generate common average reference signal for 'RAVE' subjects

get_available_morph_to_template(): Get names of available non-linear transforms to the templates

get_projects(): Get all possible projects in 'RAVE' default directory

glimpse_voltage_repository_with_blocks() glimpse_voltage_filearray(): Visualizes repositories with interactive plots

import_from_brainvis() import_from_edf() import_from_h5_mat_per_block() import_from_h5_mat_per_channel() import_from_nevnsx(): Import signal data into 'RAVE'

install_openneuro(): Install data-sets from OpenNeuro

install_subject(): Install a subject from the internet, a zip file or a directory

save_meta2() load_meta2(): Load or save meta data to 'RAVE' subject

new_electrode() new_reference(): Create new electrode channel instance or a reference signal instance

new_rave_subject() as_rave_subject() has_rave_subject(): Get RAVESubject instance from character

niftyreg_coreg() cmd_run_niftyreg_coreg(): Register a computerized tomography (CT) image to MRI via 'NiftyReg'

plot_volume_slices(): Plot volume slices into scalable vector graphics SVG images

power_baseline(): Calculate power baseline

prepare_subject_bare() prepare_subject_bare0(): 'RAVE' repository: basic

prepare_subject_with_blocks() prepare_subject_raw_voltage_with_blocks() prepare_subject_voltage_with_blocks() prepare_subject_time_frequency_coefficients_with_blocks() prepare_subject_phase_with_blocks() prepare_subject_power_with_blocks(): 'RAVE' repository: with entire recording blocks

prepare_subject_with_epochs() prepare_subject_raw_voltage_with_epochs() prepare_subject_voltage_with_epochs() prepare_subject_time_frequency_coefficients_with_epochs() prepare_subject_power_with_epochs() prepare_subject_power() prepare_subject_phase_with_epochs(): 'RAVE' repository: with epochs

py_nipy_coreg() cmd_run_nipy_coreg(): Register a computerized tomography (CT) image to MRI via 'nipy'

rave_brain(): Load 'FreeSurfer' brain from 'RAVE'

normalize_commandline_path() cmd_dcm2niix() cmd_freesurfer_home() cmd_fsl_home() cmd_afni_home() cmd_homebrew() cmd_dry_run() rscript_path(): Find external command-line tools

rave_legacy_subject_format_conversion(): Legacy support for 'RAVE' 1.0 format

rave_path(): Find file paths based on storage

LOCATION_TYPES SIGNAL_TYPES IMPORT_FORMATS YAEL_IMAGE_TYPES MNI305_to_MNI152: 'RAVE' constants

run_wavelet(): Apply Morlet-Wavelet to subject

transform_point_to_template() transform_thinfilm_to_mni152(): Calculate template 'MNI' coordinates for points on native brain

validate_subject: Validate subject data integrity

validate_time_window(): Validate time windows to be used