Create a 'YAEL' imaging processing instance — as_yael

Image registration across different modals. Normalize brain 'T1'-weighted 'MRI' to template brain and generate subject-level atlas files. See cmd_run_yael_preprocess to see how to run a built-in workflow

Usage

as_yael_process(subject)

Arguments

subject: character (subject code, or project name with subject code), or RAVESubject instance.

Value

A processing instance, see YAELProcess

Examples


process <- as_yael_process("YAEL/test_subject")

if (FALSE) { # \dontrun{

# Import and set original T1w MRI and CT
process$set_input_image("/path/to/T1w_MRI.nii", type = "T1w")
process$set_input_image("/path/to/CT.nii.gz", type = "CT")

# Co-register CT to MRI
process$register_to_T1w(image_type = "CT")

# Morph T1w MRI to 0.5 mm^3 MNI152 template
process$map_to_template(
  template_name = "mni_icbm152_nlin_asym_09b",
  native_type = "T1w"
)

} # }